Vitamin D Deficiency and the Critical Impact of Genetic Polymorphisms: Exploring the Role of GC, NADSYN1, and CYP2R1

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Vitamin D, often called the “sunshine vitamin,” is essential for bone health, immune function, and overall well-being. Yet, an increasing number of people worldwide struggle with Vitamin D Deficiency, which can lead to a range of health concerns—from weakened bones to low energy levels and compromised immunity. While diet and sun exposure are the most commonly discussed factors, the conversation often overlooks a critical aspect: your genes.

Scientific advances have uncovered several polymorphisms (also known as single nucleotide polymorphisms or SNPs) that can predispose certain individuals to Vitamin D Deficiency, regardless of lifestyle or dietary habits. In this in-depth article, we will explore three key genes—GC, NADSYN1, and CYP2R1—and explain how variations in these genes can affect Vitamin D levels. If you’ve ever wondered why you still can’t seem to boost your Vitamin D despite adequate sun exposure and supplementation, keep reading. Understanding the genetic component could be the missing link in your quest for optimal health.

What is Vitamin D?

Vitamin D is a fat-soluble vitamin that is unique among nutrients because the body can synthesize it through skin exposure to sunlight (specifically ultraviolet B rays). Unlike most vitamins, vitamin D also acts like a hormone, regulating a variety of bodily processes, including calcium and phosphorus balance—key players in bone health.

Forms of Vitamin D

  • Vitamin D2 (Ergocalciferol): Primarily found in plant-based foods like mushrooms exposed to UV light.
  • Vitamin D3 (Cholecalciferol): Produced in human skin when exposed to sunlight. It is also present in animal-based foods such as oily fish and egg yolks.

Both forms need to be converted through metabolic processes in the liver and kidneys to the active form, calcitriol, which the body uses for various functions.

Why Vitamin D Matters

Vitamin D plays a multitude of roles in the human body. Historically, it has been primarily associated with calcium homeostasis and bone mineralization, helping to prevent rickets in children and osteomalacia or osteoporosis in adults. However, recent research highlights Vitamin D’s far-reaching influences:

  • Immune Support: Adequate Vitamin D is essential for immune cell function, influencing both innate and adaptive immunity.
  • Hormone Regulation: Vitamin D acts as a hormone, affecting the expression of numerous genes in cells throughout the body.
  • Cell Growth and Differentiation: There is evidence to suggest that Vitamin D may regulate cellular growth, which could have implications for reducing the risk of certain types of cancer.

Despite its importance, Vitamin D Deficiency remains remarkably common. According to data from the National Institutes of Health, a significant proportion of the global population—potentially over a billion individuals—have either insufficient or deficient Vitamin D levels. The consequences of such deficiency can include fatigue, increased susceptibility to infections, and a higher risk of chronic conditions.

Understanding Vitamin D Deficiency

The term “Vitamin D Deficiency” typically refers to a serum 25-hydroxyvitamin D concentration of less than 20 ng/mL (50 nmol/L). The factors contributing to low Vitamin D levels are diverse and include:

  • Limited Sun Exposure: Most people obtain the bulk of their Vitamin D from sunlight exposure, specifically UVB radiation that triggers Vitamin D synthesis in the skin. Indoor lifestyles, use of sunblock, and living in higher latitudes all limit UVB exposure.
  • Dietary Intake: Foods such as fatty fish (salmon, mackerel, sardines), fortified milk, and egg yolks can help maintain Vitamin D levels. However, many people do not consume enough of these foods to sustain adequate levels.
  • Malabsorption: Certain gastrointestinal conditions (e.g., Crohn’s disease, celiac disease) can impair the absorption of Vitamin D from the intestine.
  • Age: As we age, the skin becomes less efficient at converting sunlight to Vitamin D, and the kidneys become less efficient at converting 25-hydroxyvitamin D to its active form, 1,25-dihydroxyvitamin D.
  • Obesity: Excess body fat can sequester vitamin D, making it less available for use in the body.

These are the well-known culprits of deficiency. But there is a growing body of evidence indicating that genes also play a critical role. Let’s take a look at how polymorphisms—tiny genetic variations—can tilt the balance toward Vitamin D Deficiency for many individuals.

Common Signs and Symptoms of Vitamin D Deficiency

Often, vitamin D deficiency goes unnoticed because the symptoms can be subtle and non-specific. However, being aware of these signs can help you identify potential issues before they escalate.

  • Frequent Illnesses or Infections: A weakened immune system may manifest as recurrent colds, flu, or other infections.
  • Fatigue and Low Energy: Chronic fatigue or a general sense of malaise can stem from insufficient vitamin D levels.
  • Bone and Back Pain: Individuals may experience discomfort in their bones or lower back, often exacerbated by standing or walking.
  • Muscle Weakness: Lack of vitamin D can impair muscle function, leading to muscle fatigue or difficulty performing everyday tasks.
  • Mood Changes: Persistent feelings of sadness, irritability, or a drop in your overall emotional well-being can be related to low vitamin D.
  • Slow Wound Healing: If cuts or scrapes take longer than usual to heal, it could be a sign of vitamin D deficiency.

If you notice any combination of these symptoms over an extended period, it’s wise to discuss them with a healthcare professional.

Genes, Polymorphisms, and SNPs: A Brief Overview

Genes are segments of DNA that provide the blueprint for proteins, enzymes, and various molecules essential for bodily functions. Within genes, minor alterations in the DNA sequence, known as single nucleotide polymorphisms (SNPs), can alter how a protein is synthesized or how efficiently it functions. These polymorphisms can be silent, beneficial, or detrimental.

When it comes to Vitamin D metabolism and regulation, certain SNPs can:

  • Decrease the efficiency of enzymes responsible for Vitamin D activation
  • Affect the transport of Vitamin D in the bloodstream
  • Alter the body’s ability to metabolize or utilize Vitamin D

Scientific research has pinpointed several genes where these SNPs can significantly influence Vitamin D status. We will focus on three of the most studied genes: GC, NADSYN1, and CYP2R1.

The GC Gene: Binding and Transport of Vitamin D

What Is the GC Gene?

Also known as Group-Specific Component, the GC gene encodes for the Vitamin D-binding protein (VDBP). This protein is the primary carrier of Vitamin D metabolites in the bloodstream. It ensures that once Vitamin D is synthesized in the skin or ingested through the diet, it is efficiently transported to various tissues, including the liver and kidneys, for further activation and utilization.

Key Polymorphisms in the GC Gene

Research indicates that certain SNPs in the GC gene can influence the concentration and binding affinity of the Vitamin D-binding protein. Individuals with certain GC gene variants may have:

  • Lower Levels of VDBP: Reduced protein in the blood can limit Vitamin D transport.
  • Altered Binding Affinity: Some variants have a lower affinity for 25-hydroxyvitamin D, meaning that Vitamin D is not carried as efficiently.

An example is the rs4588 and rs7041 polymorphisms in the GC gene. These SNPs can lead to varying levels of VDBP and have been correlated with differences in circulating Vitamin D status among different ethnic groups. Consequently, even if two individuals have identical sun exposure and dietary intake, the one with the less favorable GC gene variant might end up with lower circulating Vitamin D levels.

The NADSYN1 Gene: Synthesis of NAD and Its Role in Vitamin D Metabolism

What Is the NADSYN1 Gene?

NADSYN1 stands for NAD Synthetase 1, an enzyme involved in the synthesis of Nicotinamide Adenine Dinucleotide (NAD+). NAD+ is a crucial cofactor in many metabolic processes, including those that affect Vitamin D metabolism. The body requires adequate NAD+ to facilitate enzymatic reactions that convert Vitamin D into its active forms.

Why Is NADSYN1 Important for Vitamin D?

While NADSYN1 is not directly part of the Vitamin D synthesis pathway, NAD+ levels can modulate several enzymes involved in the hydroxylation steps that activate Vitamin D. Variations in the NADSYN1 gene might affect NAD+ biosynthesis and, consequently, how efficiently your body processes Vitamin D.

For instance, the rs12785878 SNP in NADSYN1 has been studied for its association with Vitamin D status. Some studies suggest that this variant can reduce the effectiveness of Vitamin D metabolism, leading to lower serum 25-hydroxyvitamin D levels. This implies that while NADSYN1 may not be the most famous Vitamin D–related gene, it could still be a significant player in determining your susceptibility to Vitamin D Deficiency.

The CYP2R1 Gene: Essential for Vitamin D Activation

What Is the CYP2R1 Gene?

CYP2R1 encodes a member of the cytochrome P450 family of enzymes responsible for the hydroxylation of Vitamin D in the liver, converting cholecalciferol (Vitamin D3) to 25-hydroxyvitamin D—the major circulating form. This step is critical. Without it, your body has an impaired ability to generate the form of Vitamin D that is typically measured to assess your vitamin status.

Key Polymorphisms in CYP2R1

The rs10741657 SNP in CYP2R1 is often cited in research as having a substantial impact on 25-hydroxylation efficiency. Individuals with this polymorphism might show:

  • Reduced 25-Hydroxylase Activity: Directly impairing the conversion of Vitamin D3 to 25-hydroxyvitamin D.
  • Lower Serum 25-Hydroxyvitamin D Levels: Even with normal dietary intake and sun exposure, these individuals may struggle to maintain adequate levels.

Such evidence underscores the importance of genetic testing for individuals chronically struggling with low Vitamin D levels, as routine changes in lifestyle and diet may not fully compensate if a key enzyme is less active due to a polymorphism.

Impact of Genetic Polymorphisms on Your Vitamin D Levels

  1. Combined Genetic Burden: Having one polymorphism (SNP) in a single gene might modestly affect Vitamin D levels. However, carrying multiple unfavorable variants across different genes—GC, NADSYN1, and CYP2R1—could drastically increase your risk of deficiency.
  2. Ethnic Variations: Certain polymorphisms are more prevalent in specific ethnic groups. For example, some GC gene variants that reduce VDBP levels are more common in African American populations, which can partially explain differences in Vitamin D status across ethnicities.
  3. Interaction with Lifestyle Factors: Even if you have genetic risk factors, lifestyle interventions—such as increased sun exposure and supplementation—can help mitigate the impact. However, individuals with a higher genetic burden often require more intensive strategies to maintain healthy levels.

Who Is at Risk?

While anyone can have these genetic polymorphisms, several groups should pay closer attention:

  • Individuals with a Family History of Vitamin D Deficiency: If your siblings or parents chronically battle low Vitamin D, there may be an inherited genetic component.
  • Ethnic Minorities: Those with darker skin pigmentation produce less Vitamin D with the same amount of sun exposure and may also carry specific SNPs more frequently.
  • People with Chronic Illnesses: Conditions affecting the liver, kidneys, or gastrointestinal tract can exacerbate the negative effects of these polymorphisms.
  • Older Adults: Natural declines in skin synthesis and renal conversion capacity amplify the impact of any genetic predispositions.
  • Obese Individuals: Vitamin D is fat-soluble, meaning excess body fat can sequester more of the vitamin, reducing its availability in the bloodstream. As a result, those with a higher body mass index (BMI) often face an increased risk of Vitamin D Deficiency.

Testing for Vitamin D Deficiency and Genetic Variants

If you suspect genetic factors contribute to your chronic low Vitamin D status, the following tests could offer clarity:

  1. Serum 25-Hydroxyvitamin D Test
    • The standard blood test to measure Vitamin D levels. Aim for a range of 30–50 ng/mL for optimal health, though some practitioners recommend even higher levels depending on individual needs.
  2. Genetic Testing for SNPs
    • Several direct-to-consumer genetic testing companies can screen for the polymorphisms in GC, NADSYN1, and CYP2R1. However, for a more clinical approach, you may work with a healthcare provider who can interpret these results in the context of your overall health.
  3. Comprehensive Metabolic Panel
    • While not specific to Vitamin D, it’s useful to rule out other metabolic issues that might compound Vitamin D Deficiency, such as impaired kidney or liver function.

It’s crucial to interpret these tests under the guidance of a healthcare professional. Genetic predispositions do not guarantee you will develop deficiency, but they do increase your risk. A qualified professional can help you navigate the results and design a personalized plan.

Lifestyle Strategies to Combat Vitamin D Deficiency

Even if you have a genetic predisposition to Vitamin D Deficiency, there are multiple strategies to bolster your levels:

  1. Optimized Sun Exposure
    • Aim for 10–30 minutes of midday sun exposure several times a week, depending on your skin type and geographic location.
    • Avoid overexposure; use sunscreen appropriately, especially if staying outdoors for extended periods.
  2. Dietary Intake
    • Incorporate Vitamin D–rich foods like fatty fish (salmon, mackerel), fortified dairy products, and egg yolks into your meals.
    • Consider mushrooms exposed to UV light, which can also be a good source of Vitamin D2.
  3. Supplementation
    • Work with a healthcare provider to determine your ideal dosage. Some individuals with polymorphisms in GC or CYP2R1 might require higher doses of Vitamin D.
    • Vitamin D3 (cholecalciferol) is generally preferred over D2 (ergocalciferol) due to better bioavailability and longer half-life.
  4. Synergistic Nutrients
    • Ensure adequate intake of magnesium, as it is required for proper Vitamin D metabolism.
    • Vitamin K2 (particularly MK-7) can help direct calcium to the bones, enhancing the benefits of Vitamin D.
  5. Regular Monitoring
    • Test your Vitamin D levels periodically to see if lifestyle changes are effective. Genetic predispositions may require ongoing adjustments in supplementation.
  6. Holistic Health Approach
    • Manage stress, get sufficient sleep, and maintain a healthy gut. Chronic stress and poor gut health can diminish your body’s overall nutrient absorption and usage.

Empowerise: Personalized Coaching Through Genetic Insights

At Empowerise, we believe that understanding your unique genetic blueprint is the key to unlocking lasting health transformations. Our specialized genetic tests screen for the very SNPs we’ve discussed—such as those in GC, NADSYN1, and CYP2R1—which can significantly impact your Vitamin D levels and overall vitality. By analyzing these polymorphisms, we can identify your personalized risk factors and design an approach that addresses your specific needs. You can take our gene tests here.

Why Genetic Testing Matters

  • Pinpoint Your Risk: Rather than guessing why you may struggle with low Vitamin D or other health issues, our tests reveal the genetic factors at play.
  • Targeted Interventions: Armed with data on how your body processes and utilizes Vitamin D, our experts can recommend precise supplementation, dietary adjustments, and lifestyle tweaks.
  • Comprehensive Wellness Strategy: We don’t stop at genetics. We evaluate your overall health profile, ensuring our guidance aligns with your daily habits, fitness level, and long-term goals.

Our Tailored Transformation Coaching Program

Empowerise goes beyond standard health advice. Our Tailored Transformation Coaching Program provides you with:

  1. One-on-One Guidance: Work directly with our certified coaches to develop customized strategies for nutritional balance, stress management, and exercise programs.
  2. Ongoing Support and Accountability: From regular check-ins to continuous progress monitoring, we stand by you every step of the way.
  3. Flexible, Personalized Plans: Because no two individuals are alike, our program evolves with your needs—particularly as new genetic insights and health data emerge.
  4. Holistic Approach to Health: We integrate genetic testing results with broader wellness practices, including mental well-being and healthy sleep habits.

Start Your Journey Today

Investing in your health is a decision that yields lifelong dividends. By leveraging cutting-edge genetic testing and our Tailored Transformation Coaching, you can break free from the one-size-fits-all approach and finally discover what works best for your body.

Ready to take control of your wellness journey? Enroll with Empowerise and let our expert team guide you toward improved Vitamin D levels, enhanced energy, and a more resilient you. Contact us now to learn how our genetic tests and personalized coaching can revolutionize your path to optimal health.

References and Further Reading

About the author:

Picture of Alessandro Vismara

Alessandro Vismara

Alessandro’s passion for health and fitness was seeded in a family of Physical Education Teachers. An ex American Football athlete turned Kinesiologist, he boasts a decade-long career as a personal trainer. With dual bachelor’s degrees in Philosophy and Sport Science, a master’s in Human Nutrition Sciences, his academic prowess complements his interests. His on-field expertise developed in his own personal training studio in northern Italy and having worked with elite athletes on the field as a S&C coach. A certified European Master trainer by EREPS standards, he also reached notable top level certifications like Elite Trainer SNPT, Master’s Trainer ISSA, and Precision Nutrition. A blend of athleticism, academia, and zeal, Alessandro is dedicated to sculpting a healthier you.

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